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Getting Started
- > How Do I Get a FAS Research Computing Account?
- > Running Jobs
- > User Quick Start Guide
- About Usernames
- Can I share my account?
- Command line access using a terminal
- FASSE Cluster - FAS Secure Environment
- Introduction to the FASRC Cluster -- Online
- Lab groups, sponsors, and PIs - How does it all work?
- OpenAuth
- Other Institutions
- Proxy Settings
- Reset Password
- Using Duo Mobile to display your RC two-factor code
Accounts
- > How Do I Get a FAS Research Computing Account?
- About Usernames
- Account confirmation email contents
- Account is locked
- Account Qualifications and Affiliations
- Adding additional lab groups or cluster access
- Can I share my account?
- Cluster Account Signup
- Editing your .bashrc
- How do I change lab groups?
- How do I fairly manage dual/multiple lab affiliations for work on the FASRC cluster?
- I’m a PI. How can I see if I have account approvals pending?
- Lab groups, sponsors, and PIs - How does it all work?
- Manual OpenAuth Token Setup (advanced)
- OpenAuth
- OpenAuth token on a new device
- Other Institutions
- Reset Password
- Temporary Class Accounts
- Using Duo Mobile to display your RC two-factor code
- VPN Proxy Settings instructions
- What happens to my FASRC account when I leave Harvard, graduate, or become an external collaborator?
Login & Authentication
- > User Quick Start Guide
- Access and Login FAQ
- Account is locked
- Command line access using a terminal
- Connecting to the FAS RC VPN from Linux clients
- FASSE Cluster - FAS Secure Environment
- GNU Screen
- How to log in to the cluster
- My VPN client needs updating
- OpenAuth
- OpenAuth token on a new device
- OpenAuth Troubleshooting
- Reset Password
- SSH key error, DNS spoofing message
- Synchronizing clocks
- Using Duo Mobile to display your RC two-factor code
- Using SSH ControlMaster for Single Sign-On
- VPN Proxy Settings instructions
- VPN Setup
- X11 forwarding for lightweight graphical applications
FAQs
- > How Do I Get a FAS Research Computing Account?
- Account is locked
- Center for Education Policy Research (CEPR) FAQs
- CentOS 7 Transition FAQ
- Cluster Customs and Responsibilities
- Common Cluster Pitfalls
- Frequently Asked Questions (FAQ)
- Grant Support
- Hardware, Software, and Storage Purchasing
- Harvard T.H. Chan School of Public Health
- Harvard T.H. Chan School of Public Health + FAS Research Computing Q&A
- Harvard T.H. Chan School of Public Health - FAS Research Computing Overview
- How do I fairly manage dual/multiple lab affiliations for work on the FASRC cluster?
- How do I figure out how efficient my job is?
- Lab groups, sponsors, and PIs - How does it all work?
- Other Institutions
- Publications Acknowledging the FASRC Cluster
- Reset Password
- SPINAL Expense Code Guide for Laboratory Financial Administrators
- SSH key error, DNS spoofing message
Running Jobs
- > Running Jobs
- Adding additional lab groups or cluster access
- BHI Partitions
- Cluster Customs and Responsibilities
- Command line access using a terminal
- Common Cluster Pitfalls
- Convenient SLURM Commands
- Editing your .bashrc
- Fairshare and Job Accounting
- FASSE Cluster - FAS Secure Environment
- Format of Output File
- Geophysics Partitions
- GPU Computing on the FASRC cluster
- How do I fairly manage dual/multiple lab affiliations for work on the FASRC cluster?
- How do I figure out how efficient my job is?
- HUCE Partitions
- Hybrid (MPI+OpenMP) Codes on the FASRC cluster
- MATLAB Parallel - PCT and DCS
- MATLAB Parallel Computing Toolbox simultaneous job problem
- MPI Software on the FASRC cluster
- R-MPI
- SBGrid Software for Structural Biologists
- scrontab
- SEAS Compute Resources
- Sequencing
- SLURM Memory Limits
- Slurm memory limits
- Submitting Large Numbers of Jobs to the FASRC cluster
- Troubleshooting Jobs on the Cluster
- X11 forwarding for lightweight graphical applications
Software
- Abaqus
- Alignment
- All modules - Module Search
- Application Types
- BLAST
- CERN ROOT software
- Citrix
- Comsol
- Concaterpillar
- Desktop Software via HMS RC
- EasyBuild
- FAS Licensed Software for Local Use
- Format of Output File
- Fortran and Mixed Language Codes on the FASRC cluster
- Git - Apple license requirement message
- Git and Github on the FASRC cluster
- GNU Science Library
- Gnuplot
- GraphViz
- HeLmod
- HELMOD FAQ
- How to build and install an app
- Hybrid (MPI+OpenMP) Codes on the FASRC cluster
- Installing Software Yourself
- iPython Notebook
- Julia with Jupyter notebooks on the cluster
- Jupyter notebook server on the cluster without VDI
- License Server
- Lmod modules -- introduction and instructions
- Lumerical
- Mathematica GUI Fonts
- MATLAB
- MATLAB Figures in a Batch Mode
- MATLAB Parallel - PCT and DCS
- MATLAB Parallel Computing Toolbox simultaneous job problem
- Migrate
- MPI for Python (mpi4py) on the FASRC cluster
- MPI Software on the FASRC cluster
- NCF VDI Apps
- NGS Analysis with R
- OpenFoam
- OpenMP Software on the FASRC cluster
- Optimization
- Parallel Computing on the cluster
- Perl
- Python (Anaconda)
- R - Basics
- R - Packages
- R-MPI
- Ruby
- Schrodinger Suite
- Singularity on the cluster
- Software
- Stata on the FASRC cluster
- Summary.htm Details
- TensorFlow on the cluster
- TOTALVIEW: Debugging Parallel Applications
- Trinity
- Using KNITRO with MATLAB
- VDI Apps
- Virtual Desktop (VDI) through Open OnDemand
- X11 forwarding for lightweight graphical applications
Instrument
Storage
- Coldfront - Allocation management
- Copying Data to & from the FASRC cluster using SCP or SFTP
- Data Security – Information on Storage and Use of Confidential Data (HRCI)
- Globus File Transfer
- Home directories and Scratch
- Mounting Storage on Desktop or Laptop
- Policy: scratch space
- rclone - transfer files to/from cloud storage
- rdiff-backup
- rsync
- Sequencing
- SFTP file transfer using Filezilla - Filtering
- SFTP file transfer using Filezilla (Mac/Windows/Linux)
- Starfish - Data Management
- Storage Service Center
- Storage Types - Tier 0
- Storage Types - Tier 1
- Storage Types - Tier 3
- Storage Types – Tier 2
- Transferring Data Externally
- Transferring Data on the Cluster
- Transferring files to DATA.RC
- Unix permissions
Security
Other
Policy
- Account Qualifications and Affiliations
- Can I share my account?
- Cluster Customs and Responsibilities
- Data and Data Use Agreements (DUA)
- Data Security – Information on Storage and Use of Confidential Data (HRCI)
- Data Security Levels
- License Server
- Policy: scratch space
- Publications Acknowledging the FASRC Cluster
- Submitting Large Numbers of Jobs to the FASRC cluster
- Web Scraping Policy