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Getting Started
- > User Quick Start Guide
- > How Do I Get a FAS Research Computing Account?
- FASSE Cluster - FAS Secure Environment
- > Running Jobs
- Introduction to the FASRC Cluster -- Online
- Reset Password
- OpenAuth
- Command line access using a terminal
- FASSE Proxy Settings
- Lab groups, sponsors, and PIs - How does it all work?
- Other Institutions
- Glossary
- About Usernames
- Can I share my account?
- Using Duo Mobile to display your RC two-factor code
Accounts
- > How Do I Get a FAS Research Computing Account?
- Account Qualifications and Affiliations
- Other Institutions
- What happens to my FASRC account when I leave Harvard, graduate, or become an external collaborator?
- Reset Password
- OpenAuth
- Cluster Account Signup - More details
- Account confirmation email contents
- How do I add or change lab groups?
- Lab groups, sponsors, and PIs - How does it all work?
- Editing your .bashrc
- About Usernames
- I am a PI. How can I see if I have account approvals pending?
- How do I fairly manage dual/multiple lab affiliations for work on the FASRC cluster?
- OpenAuth token on a new device
- Class Accounts & Academic Cluster
- Adding additional lab groups or cluster access
- Account is locked
- Can I share my account?
- Using Duo Mobile to display your RC two-factor code
- Manual OpenAuth Token Setup (advanced)
- VPN Proxy Settings instructions
- Can't login - Cluster access
Login & Authentication
- > User Quick Start Guide
- FASSE Cluster - FAS Secure Environment
- Reset Password
- OpenAuth
- VPN Setup
- Access and Login FAQ
- OpenAuth token on a new device
- OpenAuth Troubleshooting
- Account is locked
- Home directory full but cannot remove files
- Command line access using a terminal
- Connecting to the FAS RC VPN from Linux clients
- 2022 NCF migration to FASSE
- My VPN client needs updating
- SSH key error, DNS spoofing message
- Using Duo Mobile to display your RC two-factor code
- Synchronizing clocks
- Using SSH ControlMaster for Single Sign-On
- X11 forwarding for lightweight graphical applications
- VPN Proxy Settings instructions
- GNU Screen
- Can't login - Cluster access
FAQs
- > How Do I Get a FAS Research Computing Account?
- Frequently Asked Questions (FAQ)
- Glossary
- Cluster Customs and Responsibilities
- Common Cluster Pitfalls
- Other Institutions
- Center for Education Policy Research (CEPR) FAQs
- Harvard T.H. Chan School of Public Health - FAS Research Computing Overview
- Harvard T.H. Chan School of Public Health
- Harvard T.H. Chan School of Public Health + FAS Research Computing Q&A
- How do I fairly manage dual/multiple lab affiliations for work on the FASRC cluster?
- Lab groups, sponsors, and PIs - How does it all work?
- Hardware, Software, and Storage Purchasing
- Reset Password
- Account is locked
- How do I figure out how efficient my job is?
- 2022 NCF migration to FASSE
- SSH key error, DNS spoofing message
- Publications Acknowledging the FASRC Cluster
- Grant Support
- SPINAL Expense Code Guide for Laboratory Financial Administrators
- Rocky 8 Transition Guide
Running Jobs
- > Running Jobs
- FASSE Cluster - FAS Secure Environment
- Convenient SLURM Commands
- GPU Computing on the FASRC cluster
- How do I figure out how efficient my job is?
- Submitting Large Numbers of Jobs to the FASRC cluster
- Fairshare and Job Accounting
- Cluster Customs and Responsibilities
- Command line access using a terminal
- Slurm memory limits
- SLURM Memory Limits
- Editing your .bashrc
- MATLAB Parallel - PCT and DCS
- MATLAB Parallel Computing Toolbox simultaneous job problem
- Common Cluster Pitfalls
- Adding additional lab groups or cluster access
- How do I fairly manage dual/multiple lab affiliations for work on the FASRC cluster?
- MPI Software on the FASRC cluster
- Hybrid (MPI+OpenMP) Codes on the FASRC cluster
- BHI Partitions
- Geophysics Partitions
- HUCE Partitions
- SEAS Compute Resources
- scrontab
- SBGrid Software for Structural Biologists
- X11 forwarding for lightweight graphical applications
- Sequencing
- Kempner Partitions
Software
- Lmod modules -- introduction and instructions
- Application Types
- HELMOD FAQ
- All modules - Module Search
- Software - Overview
- Virtual Desktop (VDI) through Open OnDemand
- VDI Apps
- FASSE VDI Apps
- Installing Software Yourself
- Singularity on the cluster
- Parallel Computing on the cluster
- MPI Software on the FASRC cluster
- OpenMP Software on the FASRC cluster
- Hybrid (MPI+OpenMP) Codes on the FASRC cluster
- Using Spyder
- Abaqus
- Citrix
- Comsol
- Concaterpillar
- Fortran and Mixed Language Codes on the FASRC cluster
- Git and Github on the FASRC cluster
- Git - Apple license requirement message
- GNU Science Library
- Gnuplot
- GraphViz
- iPython Notebook
- Julia with Jupyter notebooks on the cluster
- Jupyter notebook server on the cluster without VDI
- Lumerical
- Mathematica GUI Fonts
- MATLAB
- MATLAB Parallel - PCT and DCS
- MATLAB Figures in a Batch Mode
- MATLAB Parallel Computing Toolbox simultaneous job problem
- Using KNITRO with MATLAB
- NGS Analysis with R
- OpenFoam
- Perl
- Python
- MPI for Python (mpi4py) on the FASRC cluster
- R - Basics
- R - Packages
- R - Packages with Singularity
- Ruby
- Schrodinger Suite
- Stata on the FASRC clusters
- TensorFlow on the cluster
- TOTALVIEW: Debugging Parallel Applications
- Trinity
- License Server
- X11 forwarding for lightweight graphical applications
- Desktop Software via HMS RC
- FAS Licensed Software for Local Use
- Optimization
- RStudio Server vs. RStudio Desktop OOD apps
- R and RStudio on Windows
- LANDIS
- FASRC Github User Codes Repository
- Spack software package management
- R
- Running Singularity image with CentOS 7 on Rocky 8
Instrument
Storage
- Connecting with WinSCP
- SFTP file transfer using Filezilla (Mac/Windows/Linux)
- Storage Service Center
- Home directory full but cannot remove files
- rsync
- Home / Lab directories and Scratch
- Mounting Storage on Desktop or Laptop
- rdiff-backup
- Transferring Data on the Cluster
- Tape Globus Access
- Storage Types - Tier 3
- Storage Types - Tier 1
- Storage Types – Tier 2
- Storage Types - Tier 0
- Globus File Transfer
- Starfish - Data Management
- Coldfront - Allocation management
- Policy: scratch space
- Data Security – Information on Storage and Use of Confidential Data (HRCI)
- rclone - transfer files to/from cloud storage
- Copying Data to & from the FASRC cluster using SCP or SFTP
- Sequencing
- Transferring Data Externally
- Unix permissions
- SFTP file transfer using Filezilla - Filtering
- Transferring files to DATA.RC
- How to read your Storage Service Center bill
- Sharing data for publications and long-term links or archiving
- Understanding file and group permissions
Security
Other
Policy
- Web Scraping Policy
- Account Qualifications and Affiliations
- Data and Data Use Agreements (DUA)
- Publications Acknowledging the FASRC Cluster
- Cluster Customs and Responsibilities
- Submitting Large Numbers of Jobs to the FASRC cluster
- License Server
- Policy: scratch space
- Data Security Levels
- Data Security – Information on Storage and Use of Confidential Data (HRCI)
- Can I share my account?
- Sharing data for publications and long-term links or archiving
- Account and Access Reviews
- PI Responsibilities at FAS RC
Training
IQSS
VDI
Kempner
NeedsUpdate
NeedsReview
- Application Types
- Singularity on the cluster
- Parallel Computing on the cluster
- OpenMP Software on the FASRC cluster
- Hybrid (MPI+OpenMP) Codes on the FASRC cluster
- Using Spyder
- Concaterpillar
- GNU Science Library
- Julia with Jupyter notebooks on the cluster
- Jupyter notebook server on the cluster without VDI
- Mathematica GUI Fonts
- Using KNITRO with MATLAB
- NGS Analysis with R
- Perl
- Python
- MPI for Python (mpi4py) on the FASRC cluster
- R - Basics
- R - Packages
- R - Packages with Singularity
- Ruby
- TOTALVIEW: Debugging Parallel Applications
- X11 forwarding for lightweight graphical applications
- FASRC Github User Codes Repository
