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Getting Started

About Usernames
Can I share my account?
Cluster Quick Start Guide
Command line access using a terminal
How Do I Get a FAS Research Computing Account?
Introduction to the FASRC Cluster -- Online
OpenAuth
Other Institutions
Proxy Settings
Reset Password
Running Jobs
Using Duo Mobile to display your RC two-factor code

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Accounts

About Usernames
Account confirmation email contents
Account is locked
Account Qualifications and Affiliations
Adding additional lab groups or cluster access
Can I share my account?
Cluster Account Signup
Editing your .bashrc
How do I fairly manage dual/multiple lab affiliations for work on the FASRC cluster?
How Do I Get a FAS Research Computing Account?
Manual OpenAuth Token Setup (advanced)
OpenAuth
OpenAuth token on a new device
Other Institutions
Reset Password
Temporary Class Accounts
Using Duo Mobile to display your RC two-factor code
VPN Proxy Settings instructions
What happens to my FASRC account when I leave, graduate, or become an external collaborator?

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Login & Authentication

Access and Login FAQ
Account is locked
Cluster Quick Start Guide
Command line access using a terminal
Connecting to the FAS RC VPN from Linux clients
GNU Screen
How to log in to the cluster
My VPN client needs updating
OpenAuth
OpenAuth token on a new device
OpenAuth Troubleshooting
Reset Password
SSH key error, DNS spoofing message
Synchronizing clocks
Using Duo Mobile to display your RC two-factor code
Using SSH ControlMaster for Single Sign-On
VPN Proxy Settings instructions
VPN Setup
X11 forwarding for lightweight graphical applications

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FAQs

Account is locked
Center for Education Policy Research (CEPR) FAQs
CentOS 7 Transition FAQ
Cluster Customs and Responsibilities
Common Cluster Pitfalls
Frequently Asked Questions (FAQ)
Grant Support
Hardware, Software, and Storage Purchasing
Harvard T.H. Chan School of Public Health
Harvard T.H. Chan School of Public Health + FAS Research Computing Q&A
Harvard T.H. Chan School of Public Health - FAS Research Computing Overview
How do I fairly manage dual/multiple lab affiliations for work on the FASRC cluster?
How do I figure out how efficient my job is?
How Do I Get a FAS Research Computing Account?
Other Institutions
Reset Password
SPINAL Expense Code Guide for Laboratory Financial Administrators
SSH key error, DNS spoofing message

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Running Jobs

Adding additional lab groups or cluster access
Cluster Customs and Responsibilities
Command line access using a terminal
Common Cluster Pitfalls
Convenient SLURM Commands
Editing your .bashrc
Fairshare and Job Accounting
Format of Output File
GPU Computing on the FASRC cluster
How do I fairly manage dual/multiple lab affiliations for work on the FASRC cluster?
How do I figure out how efficient my job is?
HUCE Partitions
Hybrid (MPI+OpenMP) Codes on the FASRC cluster
MATLAB Parallel - PCT and DCS
MATLAB Parallel Computing Toolbox simultaneous job problem
MPI Software on the FASRC cluster
R-MPI
Running Jobs
SBGrid Software for Structural Biologists
SEAS Compute Resources
Sequencing
SLURM Memory Limits
Slurm memory limits
Submitting Large Numbers of Jobs to the FASRC cluster
Troubleshooting Jobs on the Cluster
X11 forwarding for lightweight graphical applications

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Software

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Instrument

Instrument Sign-up
Scientific Instrument Reservations and Billing (SPINAL)
Sequencing
SPINAL Usage Guide for Laboratory Administrators
SPINAL Usage Guide for Researchers

Storage

Cluster storage
Copying Data to & from the FASRC cluster using SCP or SFTP
Data Security – Information on Storage and Use of Confidential Data (HRCI)
Globus File Transfer
Mounting Storage on Desktop or Laptop
Policy: scratch space
rclone - transfer files to/from cloud storage
rdiff-backup
rsync
Sequencing
SFTP file transfer using Filezilla - Filtering
SFTP file transfer using Filezilla (Mac/Windows/Linux)
Transferring Data Externally
Transferring Data on the Cluster
Transferring files to DATA.RC
Unix permissions

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Security

Data and Data Use Agreements (DUA)
Data Security – Information on Storage and Use of Confidential Data (HRCI)
Nielsen Dataset
Proxy Settings

Other

Find-n-Replace
Grant Support
Hardware, Software, and Storage Purchasing
Instrument Sign-up
Other Resources
SPINAL Expense Code Guide for Laboratory Financial Administrators
Support
Unix permissions

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Policy

Account Qualifications and Affiliations
Can I share my account?
Cluster Customs and Responsibilities
Data and Data Use Agreements (DUA)
Data Security – Information on Storage and Use of Confidential Data (HRCI)
Policy: scratch space
Submitting Large Numbers of Jobs to the FASRC cluster
Web Scraping Policy

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Training

Training Links
Training Materials

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Except where otherwise noted, this content is licensed under Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International license.

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