The following is a list of the modules and extensions currently available:
- Anaconda2: Anaconda2/2019.10-fasrc01
Anaconda2 Python2 Implementation
- DeepDive: DeepDive/master-ncf
- IDL: IDL/8.7.2-fasrc01
ITT’s IDL, version 8.7.2
- Mambaforge: Mambaforge/22.11.1-fasrc01, Mambaforge/23.3.1-fasrc01
Mamba Python Implementation
- R: R/4.2.2-fasrc01, R/4.3.1-fasrc01
R for Statistical Computing
- abaqus: abaqus/2021-fasrc01
Abaqus is a finite element analysis and engineering software
- act: act/master-ncf
- act_mc: act_mc/master-ncf
- action: action/master-ncf
- activity: activity/master-ncf
- actw_mc: actw_mc/master-ncf
- afni: afni/18.3.05-fasrc-ncf, afni/2015_07_22_0900-ncf, …
- aggregate_gps: aggregate_gps/master-ncf
- aggregate_gps_mc: aggregate_gps_mc/master-ncf
- almanac: almanac/master-ncf
- ants: ants/2.1.0-ncf, ants/2.3.1-ncf, ants/2.4.3-ncf
- atom: atom/1.38.2-ncf
- audioqc: audioqc/master-ncf
- balancesheet: balancesheet/master-ncf
- beiwe: beiwe/master-ncf, beiwe/4.2-ncf, beiwe/5.0-ncf, beiwe/5.1-ncf, …
- beiwe_deepdive: beiwe_deepdive/master-ncf
- beiwe_tz: beiwe_tz/master-ncf
- boldqa: boldqa/bugfix-ncf, boldqa/master-ncf
- boldqc2: boldqc2/master-ncf, boldqc2/v1.1-ncf
- boldqc2-tests: boldqc2-tests/master-ncf
- boris: boris/7.13.9-ncf, boris/8.9.9-ncf
- bursts: bursts/master-ncf
- buttons: buttons/master-ncf
- calls: calls/master-ncf
- caret: caret/5.0-ncf, caret/5.65-ncf
- chromium.org/chromium: chromium.org/chromium/102.0.5005.115-ncf
- cmake: cmake/3.25.2-fasrc01, cmake/3.27.5-fasrc01
Cross platform build tool
- cogfast: cogfast/master-ncf
- comsol: comsol/6.1-fasrc01
COMSOL Multiphysics is an engineering, design, and finite element
analysis software environment for the modeling and simulation of
any physics-based system.
- connectome_workbench: connectome_workbench/1.3.1-ncf, …
- containers/freeview: containers/freeview/6.0.0-ncf
- containers/ghcr.io/harvard-nrg/scanbuddy: …
- contrasts: contrasts/master-ncf
- cryptease: cryptease/master-ncf
- cuda: cuda/9.1.85-fasrc01, cuda/11.3.1-fasrc01, cuda/11.8.0-fasrc01, cuda/12.0.1-fasrc01, cuda/12.2.0-fasrc01
Module for CUDA libraries
- cudnn: cudnn/8.8.0.121_cuda12-fasrc01, cudnn/8.9.2.26_cuda11-fasrc01, cudnn/8.9.2.26_cuda12-fasrc01
The NVIDIA CUDA Deep Neural Network library (cuDNN) is a
GPU-accelerated library of primitives for deep neural networks.
- cyana/2.1-fasrc01
- data_avail: data_avail/master-ncf
- dcm2niix: dcm2niix/1.0.20180622-ncf, dcm2niix/1.0.20200331-ncf, …
- dcmtk: dcmtk/3.6-ncf, dcmtk/3.6.6-ncf
- deep_summary: deep_summary/master-ncf
- dicombrowser: dicombrowser/1.7.5.20181217092853-ncf
- diffqc: diffqc/master-ncf, diffqc/0.1-ncf, diffqc/0.2-ncf
- dlib: dlib/19.1.0-ncf
- encrypt: encrypt/master-ncf, encrypt/stable-ncf, encrypt/0.1-ncf, …
- eqc2_parameters: …
- erlang: erlang/19.2-ncf
- executors: executors/master-ncf, executors/0.1.0-ncf, …
- extqc_report: extqc_report/master-ncf, extqc_report/1.0-ncf, …
- extract: extract/master-ncf
- extract_gen: extract_gen/master-ncf
- falff: falff/master-ncf, falff/0.1-ncf
- fcfaster: fcfaster/master-ncf
- fcqc: fcqc/feature-ncf, fcqc/master-ncf, fcqc/v1.1.0-ncf, …
- fftw: fftw/3.3.10-fasrc01
Fastest Fourier Transform in the West
- flex: flex/2.6.4-fasrc01
flex is a tool for generating scanners – programs which recognize
lexical patterns in text.
- fmriprep: fmriprep/1.1.4-ncf, fmriprep/20.2.1-ncf, …
- freesurfer: freesurfer/5.3.0.HCP-ncf, freesurfer/5.3.0-ncf, …
- freeview: freeview/6.0.0-ncf
- freq: freq/master-ncf
- fsl: fsl/4.0.3-ncf, fsl/4.1.7-ncf, fsl/5.0.4-ncf, …
- gcc: gcc/9.5.0-fasrc01, gcc/10.2.0-fasrc01, gcc/12.2.0-fasrc01, gcc/13.2.0-fasrc01
the GNU Compiler Collection version 9.3.0
- geneactiv_summary: geneactiv_summary/master-ncf
- gitlab-ci-deploy: gitlab-ci-deploy/master-ncf
- gmp: gmp/6.2.1-fasrc01, gmp/6.3.0-fasrc01
GMP is a free library for arbitrary precision arithmetic, operating on
signed integers, rational numbers, and floating-point numbers.
- gsl: gsl/2.7-fasrc01
GSL, The GNU Scientific Library (GSL) is a numerical library for C
and C++ programmers.
- gstreamer: gstreamer/0.10
GStreamer is a library for constructing graphs of media-handling
components. The applications it supports range from simple
Ogg/Vorbis playback, audio/video streaming to complex audio
(mixing) and video (non-linear editing) processing. Allows access
to older version of gstreamer for older applications
- hdf5: hdf5/1.10.7-fasrc01, hdf5/1.12.2-fasrc01, hdf5/1.14.0-fasrc01, hdf5/1.14.2-fasrc01
HDF5 is a data model, library, and file format for storing and
managing data.
- heudiconv: heudiconv/0.5.1-ncf
- iProc: iProc/dev_main-ncf, iProc/align_step_names-ncf, …
- imagemagick: imagemagick/6.7.8-10-rocky8_x64-ncf, …
- influxdb: influxdb/1.4.2-ncf
- intel: intel/23.0.0-fasrc01, intel/23.2.0-fasrc01
Intel oneAPI 2023: Compilers, Libraries and HPC Tools
- intel-mkl: intel-mkl/23.0.0-fasrc01, intel-mkl/23.2.0-fasrc01
Intel Math Kernel Library
- intelmpi: intelmpi/2021.8.0-fasrc01, intelmpi/2021.10.0-fasrc01
MPI from Intel Cluster Studio
- intradb_sync: intradb_sync/master-ncf
- ior: ior/3.3.0-fasrc01
IOR Benchmark
- jasper: jasper/1.900.1-fasrc02
The JasPer Project is an open-source initiative to provide a free
software-based reference implementation of the codec specified in
the JPEG-2000 Part-1 standard (i.e., ISO/IEC 15444-1).
- jdk: jdk/20.0.1-fasrc01
Java Development Kit
- jpeg: jpeg/6b-fasrc02
The JPEG library
- julia: julia/1.0.0-ncf
- kitchen: kitchen/beiwe-ncf, kitchen/edw-ncf, kitchen/master-ncf, …
- knitro/13.2.0-fasrc01
- libpng: libpng/1.6.25-fasrc01, libpng/1.6.30-ncf
Library for use in applications that read, create, and manipulate
PNG (Portable Network Graphics) raster image files.
- logrotate: logrotate/3.12.3-ncf
- lumerical-seas: lumerical-seas/2021_7bf43e7149-fasrc01, …
Lumerical FDTD and Device sofware for SEAS
- mano: mano/master-ncf
- mapalign: mapalign/master-ncf
- markov_gps: markov_gps/master-ncf
- masilab/prequal: masilab/prequal/1.0.8-ncf
- mathematica: mathematica/12.1.1-fasrc01, mathematica/13.3.0-fasrc01
Mathematica is a computational software program used in many
scientific, engineering, mathematical and computing fields, based
on symbolic mathematics
- matlab: matlab/R2007a-ncf, matlab/R2012b-ncf, matlab/R2015b-ncf, …
a high-level language and interactive environment for numerical
computation, visualization, and programming
- metabeiwe: metabeiwe/master-ncf
- miniconda2: miniconda2/py27_4.7.12.1-linux_x64-ncf, …
- miniconda3: miniconda3/py37_4.8.2-linux_x64-ncf, …
- mongodb: mongodb/rhel62-3.4.0-ncf, mongodb/rhel62-3.4.10-ncf, …
- morphometrics: morphometrics/master-ncf, morphometrics/0.1-ncf, …
- morphometry: morphometry/master-ncf, morphometry/multi_anat-ncf, …
- mpc: mpc/1.2.1-fasrc01, mpc/1.3.1-fasrc01, mpc/1.3.1-fasrc02
Gnu Mpc is a C library for the arithmetic of complex numbers with
arbitrarily high precision and correct rounding of the result.
- mpfr: mpfr/4.1.0-fasrc01, mpfr/4.2.0-fasrc01, mpfr/4.2.1-fasrc01
The MPFR library is a C library for multiple-precision
floating-point computations with correct rounding.
- mpich: mpich/4.1-fasrc01, mpich/4.1.2-fasrc01
High-Performance Portable MPI
- mri_convert: mri_convert/2015_11_09-ncf, …
- mri_metadata: mri_metadata/master-ncf, mri_metadata/0.1-ncf, …
- mri_reface: mri_reface/0.3-ncf
- mricrogl: mricrogl/1.0.20180622-ncf, mricrogl/1.0.20200331-ncf, …
- mricron: mricron/2012_12_grosman-ncf, mricron/2012_12-ncf
- mriqc: mriqc/0.14.2-ncf, mriqc/0.16.1-ncf, mriqc/61b7a32-ncf
- mtl1: mtl1/master-ncf
- mtl2: mtl2/master-ncf
- mtl3: mtl3/habibr80-master-patch-15030-ncf, …
- mtl4: mtl4/master-ncf
- mtl5: mtl5/master-ncf
- mtl6: mtl6/master-ncf
- ncf: ncf/1.0.0-fasrc01
Activates NCF modules
- netcdf-c: netcdf-c/4.8.0-fasrc01, netcdf-c/4.8.1-fasrc01, netcdf-c/4.9.2-fasrc03
NetCDF is a set of software libraries and self-describing,
machine-independent data formats that support the creation,
access, and sharing of array-oriented scientific data.
- netcdf-cxx4: netcdf-cxx4/4.3.1-fasrc02, netcdf-cxx4/4.3.1-fasrc03
NetCDF 4 C++ libraries
- netcdf-fortran: netcdf-fortran/4.5.3-fasrc01, netcdf-fortran/4.6.1-fasrc01
NetCDF is a set of software libraries and self-describing,
machine-independent data formats that support the creation,
access, and sharing of array-oriented scientific data.
neuropointillist: neuropointillist/master-ncf
- niftidiff: niftidiff/1.0-ncf
- niftyreg: niftyreg/1.3.9-ncf
- nipreps/fmriprep: nipreps/fmriprep/20.2.1-ncf, …
- nipreps/mriqc: nipreps/mriqc/22.0.1-ncf
- nipype: nipype/0.9.2-ncf, nipype/0.9.2.1-ncf, nipype/0.11.0.1-ncf
- nodejs: nodejs/0.8.16-ncf, nodejs/6.3.1-ncf, nodejs/8.9.4-ncf, …
- nrg: nrg/1.0.0
- openface: openface/0.2.1-ncf
- openmpi: openmpi/4.1.0-fasrc01, openmpi/4.1.4-fasrc01, openmpi/4.1.5-fasrc03
Full MPI-3.1 standards conformance
- opensmile: opensmile/2.3.0-ncf
- parallel: parallel/20180522-rocky8_x64-ncf, …
- parappa: parappa/master-ncf
- pari/2.15.4-fasrc01
- pari/2.15.4-fasrc02
- parse_gps: parse_gps/master-ncf
- parse_gps_mc: parse_gps_mc/master-ncf
- pdtoolkit/3.25.1-fasrc01
- perl_modules: perl_modules/5.10.1-ncf
- phantomjs: phantomjs/2.1.1-ncf, phantomjs/2.2b-ncf
- philips: philips/master-ncf
- philips_marker: philips_marker/master-ncf
- phoenixfs: phoenixfs/master-ncf, phoenixfs/0.1-ncf, …
- phone_accel: phone_accel/master-ncf
- phone_audio: phone_audio/master-ncf
- phone_gps: phone_gps/master-ncf
- phone_gps_mc: phone_gps_mc/master-ncf
- phone_power: phone_power/master-ncf
- phone_qbpd_mc: phone_qbpd_mc/master-ncf
- phone_quest: phone_quest/master-ncf
- phone_quest_fup: phone_quest_fup/master-ncf
- phone_quest_mc: phone_quest_mc/habibr80-master-patch-28184-ncf, …
- phone_walk: phone_walk/master-ncf
- phone_walk2: phone_walk2/master-ncf
- phone_walk_mc: phone_walk_mc/master-ncf
- pipeline: pipeline/foobar-ncf, pipeline/master-ncf, pipeline/0.9-ncf
- poldracklab/fmriprep: poldracklab/fmriprep/1.1.4-ncf
- poldracklab/mriqc: poldracklab/mriqc/0.14.2-ncf, …
- preprocess_gps: preprocess_gps/master-ncf
- preprocess_gps_mc: preprocess_gps_mc/master-ncf
- press: press/master-ncf
- process_gps: process_gps/master-ncf
- process_gps_mc: process_gps_mc/master-ncf
- process_gpsh_mc: process_gpsh_mc/master-ncf
- process_gpsp: process_gpsp/master-ncf
- process_mri: process_mri/master-ncf
- procfaster: procfaster/master-ncf, procfaster/1.1-ncf, …
- proot: proot/main-ncf
- pycharm: pycharm/4.0.1-ncf, pycharm/2017.3.1-ncf
- pycharm-community: pycharm-community/2023.1-fasrc01
a Python IDE with smart code completion, code inspections,
on-the-fly error highlighting and quick-fixes, along with
automated code refactorings and rich navigation capabilities
- pyenv: pyenv/1.2.16-ncf
- pylib: pylib/master-ncf, pylib/stable-ncf, pylib/4.0-ncf, …
- pypi: pypi/0.1-ncf
- python: python/2.7.16-fasrc01, python/3.10.9-fasrc01, python/3.10.12-fasrc01
the Anaconda distribution of the Python programming language
- qatools: qatools/1.1-ncf
- qcact: qcact/master-ncf
- qsiprep: qsiprep/0.14.0-ncf
- questionnaire: questionnaire/master-ncf
- rabbitmq: rabbitmq/3.6.6-ncf
- redis: redis/4.0.11-ncf
- rlibs: rlibs/3.3.3-ncf
- rsnapshot: rsnapshot/1.4.2-ncf
- rstudio: rstudio/2023.03.0-fasrc01, rstudio/2023.06.2-fasrc01
RStudio is an integrated development environment (IDE) for R.
- sage/10.0-fasrc01
- sas: sas/9.4-fasrc01
SAS 9.4
- sbatch2: sbatch2/master-ncf
- scans: scans/bugfix-ncf, scans/master-ncf, scans/1.0.0-ncf
- scheduler: scheduler/dev-ncf, scheduler/await-ncf, …
- schwarz/mri_reface: schwarz/mri_reface/test-ncf, …
- sklearn: sklearn/0.18.1-ncf
- slphone: slphone/master-ncf
- snpm/13: snpm/13/12.6225b.1-ncf
- spack: spack/main-ncf
- spm: spm/2.0-ncf, spm/8.4667-ncf, spm/8.5236-ncf, spm/12.5581b-ncf, …
- spmtools: spmtools/master-ncf, spmtools/1.0-ncf
- spmtools-centos7: spmtools-centos7/master-ncf, …
- stata: stata/17.0-fasrc01
Stata: Stata is a general-purpose statistical software package :
version MP 14.0 (64 core)
- stopwatch: stopwatch/master-ncf
- stunnel: stunnel/5.42-ncf, stunnel/5.66-ncf
- sublime_text: sublime_text/3.1.1-ncf
- survana: survana/0.1.8-ncf
- survey: survey/master-ncf
- sync: sync/master-ncf
- sync_mc: sync_mc/master-ncf
- sync_phone: sync_phone/master-ncf
- syncphone: syncphone/master-ncf
- syncphone_mc: syncphone_mc/master-ncf
- szip: szip/2.1.1-fasrc01, szip/2.1.1-fasrc02
Compression library for HDF5
- tau/2.32.1-fasrc01
- texts: texts/master-ncf
- tigervnc: tigervnc/1.7.1-ncf
- timestamp: timestamp/master-ncf, timestamp/stable-ncf
- timezone: timezone/master-ncf
- triple_a: triple_a/master-ncf, triple_a/v1.0.0-ncf, …
- triple_a_centos7: triple_a_centos7/master-ncf
- triptan: triptan/dev-ncf, …
- upact: upact/master-ncf
- venv/boldqc2: venv/boldqc2/master-py27-ncf
- venv/boris: venv/boris/7.13.9-ncf
- venv/cryptease: venv/cryptease/0.2.0-ncf
- venv/extqc_report: venv/extqc_report/main-linux_x64-ncf, …
- venv/habib/gps: venv/habib/gps/py37-ncf
- venv/madrctagger: venv/madrctagger/main-ncf
- venv/morphometrics3: venv/morphometrics3/master-ncf
- venv/mrverify: venv/mrverify/0.0.1-ncf, venv/mrverify/0.0.2-ncf, …
- venv/phoenix/1.0-py37-ncf: venv/phoenix/1.0-py37-ncf
- venv/phoenix/gps: venv/phoenix/gps/py37-ncf
- venv/ssbc_report: venv/ssbc_report/0.1.0-ncf
- venv/syncxnat: venv/syncxnat/master-ncf
- venv/yaxil: venv/yaxil/f96d6f3-ncf, venv/yaxil/0.7.2-ncf, …
- vscode: vscode/1.76-fasrc01, vscode/1.82-fasrc01
Lightweight and powerful source code editor.
- watch: watch/master-ncf
- wkhtmltox: wkhtmltox/0.12.3-ncf
- xmetabeiwe: xmetabeiwe/master-ncf, xmetabeiwe/python-ncf
- xnat2bids: xnat2bids/1.0-ncf
- xnat_maintenance: xnat_maintenance/master-ncf, …
- xnat_tools: xnat_tools/master-ncf, xnat_tools/1.0-ncf, …
- xplor-nih/3.7.0.1-fasrc01
- yaxil: yaxil/iProcShim-ncf, yaxil/master-ncf, yaxil/stable-ncf, …
- zeus: zeus/3.0-ncf
- zlib: zlib/1.2.11-fasrc01, zlib/1.2.11-fasrc02, zlib/1.2.13-fasrc01, zlib/1.3-fasrc01
zlib version 1.2.11
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