Search Docs by Keyword

Table of Contents

All modules – Module Search

Tip: For additional info on modules, please see: Lmod modules – introduction and instructions

You can see the available modules for your currently loaded compiler or MPI version using module avail. Note that module avail only shows the modules that can currently be loaded, it does not show those modules built against specific compilers and versions of MPI. To see those modules you must load the compiler and MPI versions you want to use.

If the avail list is too long consider trying:

module --default avail¬†or ml -d av” to just list the default modules.
module overview or ml ov to display the number of modules for each name.

You can see a list of all available modules, regardless of complier or MPI, using module spider

You can find out more about modules and software on the following pages:

Module List

Updated 08/25/23

The following is a list of the modules and extensions currently available:
  • Anaconda2: Anaconda2/2019.10-fasrc01
    Anaconda2 Python2 Implementation
  • DeepDive: DeepDive/master-ncf
  • IDL: IDL/8.7.2-fasrc01
    ITT’s IDL, version 8.7.2
  • Mambaforge: Mambaforge/22.11.1-fasrc01, Mambaforge/23.3.1-fasrc01
    Mamba Python Implementation
  • R: R/4.2.2-fasrc01, R/4.3.1-fasrc01
    R for Statistical Computing
  • abaqus: abaqus/2021-fasrc01
    Abaqus is a finite element analysis and engineering software
  • act: act/master-ncf
  • act_mc: act_mc/master-ncf
  • action: action/master-ncf
  • activity: activity/master-ncf
  • actw_mc: actw_mc/master-ncf
  • afni: afni/18.3.05-fasrc-ncf, afni/2015_07_22_0900-ncf, …
  • aggregate_gps: aggregate_gps/master-ncf
  • aggregate_gps_mc: aggregate_gps_mc/master-ncf
  • almanac: almanac/master-ncf
  • ants: ants/2.1.0-ncf, ants/2.3.1-ncf, ants/2.4.3-ncf
  • atom: atom/1.38.2-ncf
  • audioqc: audioqc/master-ncf
  • balancesheet: balancesheet/master-ncf
  • beiwe: beiwe/master-ncf, beiwe/4.2-ncf, beiwe/5.0-ncf, beiwe/5.1-ncf, …
  • beiwe_deepdive: beiwe_deepdive/master-ncf
  • beiwe_tz: beiwe_tz/master-ncf
  • boldqa: boldqa/bugfix-ncf, boldqa/master-ncf
  • boldqc2: boldqc2/master-ncf, boldqc2/v1.1-ncf
  • boldqc2-tests: boldqc2-tests/master-ncf
  • boris: boris/7.13.9-ncf, boris/8.9.9-ncf
  • bursts: bursts/master-ncf
  • buttons: buttons/master-ncf
  • calls: calls/master-ncf
  • caret: caret/5.0-ncf, caret/5.65-ncf
  • chromium.org/chromium: chromium.org/chromium/102.0.5005.115-ncf
  • cmake: cmake/3.25.2-fasrc01, cmake/3.27.5-fasrc01
    Cross platform build tool
  • cogfast: cogfast/master-ncf
  • comsol: comsol/6.1-fasrc01
    COMSOL Multiphysics is an engineering, design, and finite element
    analysis software environment for the modeling and simulation of
    any physics-based system.
  • connectome_workbench: connectome_workbench/1.3.1-ncf, …
  • containers/freeview: containers/freeview/6.0.0-ncf
  • containers/ghcr.io/harvard-nrg/scanbuddy: …
  • contrasts: contrasts/master-ncf
  • cryptease: cryptease/master-ncf
  • cuda: cuda/9.1.85-fasrc01, cuda/11.3.1-fasrc01, cuda/11.8.0-fasrc01, cuda/12.0.1-fasrc01, cuda/12.2.0-fasrc01
    Module for CUDA libraries
  • cudnn: cudnn/8.8.0.121_cuda12-fasrc01, cudnn/8.9.2.26_cuda11-fasrc01, cudnn/8.9.2.26_cuda12-fasrc01
    The NVIDIA CUDA Deep Neural Network library (cuDNN) is a
    GPU-accelerated library of primitives for deep neural networks.
  • cyana/2.1-fasrc01
  • data_avail: data_avail/master-ncf
  • dcm2niix: dcm2niix/1.0.20180622-ncf, dcm2niix/1.0.20200331-ncf, …
  • dcmtk: dcmtk/3.6-ncf, dcmtk/3.6.6-ncf
  • deep_summary: deep_summary/master-ncf
  • dicombrowser: dicombrowser/1.7.5.20181217092853-ncf
  • diffqc: diffqc/master-ncf, diffqc/0.1-ncf, diffqc/0.2-ncf
  • dlib: dlib/19.1.0-ncf
  • encrypt: encrypt/master-ncf, encrypt/stable-ncf, encrypt/0.1-ncf, …
  • eqc2_parameters: …
  • erlang: erlang/19.2-ncf
  • executors: executors/master-ncf, executors/0.1.0-ncf, …
  • extqc_report: extqc_report/master-ncf, extqc_report/1.0-ncf, …
  • extract: extract/master-ncf
  • extract_gen: extract_gen/master-ncf
  • falff: falff/master-ncf, falff/0.1-ncf
  • fcfaster: fcfaster/master-ncf
  • fcqc: fcqc/feature-ncf, fcqc/master-ncf, fcqc/v1.1.0-ncf, …
  • fftw: fftw/3.3.10-fasrc01
    Fastest Fourier Transform in the West
  • flex: flex/2.6.4-fasrc01
    flex is a tool for generating scanners – programs which recognize
    lexical patterns in text.
  • fmriprep: fmriprep/1.1.4-ncf, fmriprep/20.2.1-ncf, …
  • freesurfer: freesurfer/5.3.0.HCP-ncf, freesurfer/5.3.0-ncf, …
  • freeview: freeview/6.0.0-ncf
  • freq: freq/master-ncf
  • fsl: fsl/4.0.3-ncf, fsl/4.1.7-ncf, fsl/5.0.4-ncf, …
  • gcc: gcc/9.5.0-fasrc01, gcc/10.2.0-fasrc01, gcc/12.2.0-fasrc01, gcc/13.2.0-fasrc01
    the GNU Compiler Collection version 9.3.0
  • geneactiv_summary: geneactiv_summary/master-ncf
  • gitlab-ci-deploy: gitlab-ci-deploy/master-ncf
  • gmp: gmp/6.2.1-fasrc01, gmp/6.3.0-fasrc01
    GMP is a free library for arbitrary precision arithmetic, operating on
    signed integers, rational numbers, and floating-point numbers.
  • gsl: gsl/2.7-fasrc01
    GSL, The GNU Scientific Library (GSL) is a numerical library for C
    and C++ programmers.
  • gstreamer: gstreamer/0.10
    GStreamer is a library for constructing graphs of media-handling
    components. The applications it supports range from simple
    Ogg/Vorbis playback, audio/video streaming to complex audio
    (mixing) and video (non-linear editing) processing. Allows access
    to older version of gstreamer for older applications
  • hdf5: hdf5/1.10.7-fasrc01, hdf5/1.12.2-fasrc01, hdf5/1.14.0-fasrc01, hdf5/1.14.2-fasrc01
    HDF5 is a data model, library, and file format for storing and
    managing data.
  • heudiconv: heudiconv/0.5.1-ncf
  • iProc: iProc/dev_main-ncf, iProc/align_step_names-ncf, …
  • imagemagick: imagemagick/6.7.8-10-rocky8_x64-ncf, …
  • influxdb: influxdb/1.4.2-ncf
  • intel: intel/23.0.0-fasrc01, intel/23.2.0-fasrc01
    Intel oneAPI 2023: Compilers, Libraries and HPC Tools
  • intel-mkl: intel-mkl/23.0.0-fasrc01, intel-mkl/23.2.0-fasrc01
    Intel Math Kernel Library
  • intelmpi: intelmpi/2021.8.0-fasrc01, intelmpi/2021.10.0-fasrc01
    MPI from Intel Cluster Studio
  • intradb_sync: intradb_sync/master-ncf
  • ior: ior/3.3.0-fasrc01
    IOR Benchmark
  • jasper: jasper/1.900.1-fasrc02
    The JasPer Project is an open-source initiative to provide a free
    software-based reference implementation of the codec specified in
    the JPEG-2000 Part-1 standard (i.e., ISO/IEC 15444-1).
  • jdk: jdk/20.0.1-fasrc01
    Java Development Kit
  • jpeg: jpeg/6b-fasrc02
    The JPEG library
  • julia: julia/1.0.0-ncf
  • kitchen: kitchen/beiwe-ncf, kitchen/edw-ncf, kitchen/master-ncf, …
  • knitro/13.2.0-fasrc01
  • libpng: libpng/1.6.25-fasrc01, libpng/1.6.30-ncf
    Library for use in applications that read, create, and manipulate
    PNG (Portable Network Graphics) raster image files.
  • logrotate: logrotate/3.12.3-ncf
  • lumerical-seas: lumerical-seas/2021_7bf43e7149-fasrc01, …
    Lumerical FDTD and Device sofware for SEAS
  • mano: mano/master-ncf
  • mapalign: mapalign/master-ncf
  • markov_gps: markov_gps/master-ncf
  • masilab/prequal: masilab/prequal/1.0.8-ncf
  • mathematica: mathematica/12.1.1-fasrc01,¬†mathematica/13.3.0-fasrc01
    Mathematica is a computational software program used in many
    scientific, engineering, mathematical and computing fields, based
    on symbolic mathematics
  • matlab: matlab/R2007a-ncf, matlab/R2012b-ncf, matlab/R2015b-ncf, …
    a high-level language and interactive environment for numerical
    computation, visualization, and programming
  • metabeiwe: metabeiwe/master-ncf
  • miniconda2: miniconda2/py27_4.7.12.1-linux_x64-ncf, …
  • miniconda3: miniconda3/py37_4.8.2-linux_x64-ncf, …
  • mongodb: mongodb/rhel62-3.4.0-ncf, mongodb/rhel62-3.4.10-ncf, …
  • morphometrics: morphometrics/master-ncf, morphometrics/0.1-ncf, …
  • morphometry: morphometry/master-ncf, morphometry/multi_anat-ncf, …
  • mpc: mpc/1.2.1-fasrc01, mpc/1.3.1-fasrc01, mpc/1.3.1-fasrc02
    Gnu Mpc is a C library for the arithmetic of complex numbers with
    arbitrarily high precision and correct rounding of the result.
  • mpfr: mpfr/4.1.0-fasrc01, mpfr/4.2.0-fasrc01, mpfr/4.2.1-fasrc01
    The MPFR library is a C library for multiple-precision
    floating-point computations with correct rounding.
  • mpich: mpich/4.1-fasrc01, mpich/4.1.2-fasrc01
    High-Performance Portable MPI
  • mri_convert: mri_convert/2015_11_09-ncf, …
  • mri_metadata: mri_metadata/master-ncf, mri_metadata/0.1-ncf, …
  • mri_reface: mri_reface/0.3-ncf
  • mricrogl: mricrogl/1.0.20180622-ncf, mricrogl/1.0.20200331-ncf, …
  • mricron: mricron/2012_12_grosman-ncf, mricron/2012_12-ncf
  • mriqc: mriqc/0.14.2-ncf, mriqc/0.16.1-ncf, mriqc/61b7a32-ncf
  • mtl1: mtl1/master-ncf
  • mtl2: mtl2/master-ncf
  • mtl3: mtl3/habibr80-master-patch-15030-ncf, …
  • mtl4: mtl4/master-ncf
  • mtl5: mtl5/master-ncf
  • mtl6: mtl6/master-ncf
  • ncf: ncf/1.0.0-fasrc01
    Activates NCF modules
  • netcdf-c: netcdf-c/4.8.0-fasrc01, netcdf-c/4.8.1-fasrc01, netcdf-c/4.9.2-fasrc03
    NetCDF is a set of software libraries and self-describing,
    machine-independent data formats that support the creation,
    access, and sharing of array-oriented scientific data.
  • netcdf-cxx4: netcdf-cxx4/4.3.1-fasrc02, netcdf-cxx4/4.3.1-fasrc03
    NetCDF 4 C++ libraries
  • netcdf-fortran: netcdf-fortran/4.5.3-fasrc01, netcdf-fortran/4.6.1-fasrc01
    NetCDF is a set of software libraries and self-describing,
    machine-independent data formats that support the creation,
    access, and sharing of array-oriented scientific data.
    neuropointillist: neuropointillist/master-ncf
  • niftidiff: niftidiff/1.0-ncf
  • niftyreg: niftyreg/1.3.9-ncf
  • nipreps/fmriprep: nipreps/fmriprep/20.2.1-ncf, …
  • nipreps/mriqc: nipreps/mriqc/22.0.1-ncf
  • nipype: nipype/0.9.2-ncf, nipype/0.9.2.1-ncf, nipype/0.11.0.1-ncf
  • nodejs: nodejs/0.8.16-ncf, nodejs/6.3.1-ncf, nodejs/8.9.4-ncf, …
  • nrg: nrg/1.0.0
  • openface: openface/0.2.1-ncf
  • openmpi: openmpi/4.1.0-fasrc01, openmpi/4.1.4-fasrc01, openmpi/4.1.5-fasrc03
    Full MPI-3.1 standards conformance
  • opensmile: opensmile/2.3.0-ncf
  • parallel: parallel/20180522-rocky8_x64-ncf, …
  • parappa: parappa/master-ncf
  • pari/2.15.4-fasrc01
  • pari/2.15.4-fasrc02
  • parse_gps: parse_gps/master-ncf
  • parse_gps_mc: parse_gps_mc/master-ncf
  • pdtoolkit/3.25.1-fasrc01
  • perl_modules: perl_modules/5.10.1-ncf
  • phantomjs: phantomjs/2.1.1-ncf, phantomjs/2.2b-ncf
  • philips: philips/master-ncf
  • philips_marker: philips_marker/master-ncf
  • phoenixfs: phoenixfs/master-ncf, phoenixfs/0.1-ncf, …
  • phone_accel: phone_accel/master-ncf
  • phone_audio: phone_audio/master-ncf
  • phone_gps: phone_gps/master-ncf
  • phone_gps_mc: phone_gps_mc/master-ncf
  • phone_power: phone_power/master-ncf
  • phone_qbpd_mc: phone_qbpd_mc/master-ncf
  • phone_quest: phone_quest/master-ncf
  • phone_quest_fup: phone_quest_fup/master-ncf
  • phone_quest_mc: phone_quest_mc/habibr80-master-patch-28184-ncf, …
  • phone_walk: phone_walk/master-ncf
  • phone_walk2: phone_walk2/master-ncf
  • phone_walk_mc: phone_walk_mc/master-ncf
  • pipeline: pipeline/foobar-ncf, pipeline/master-ncf, pipeline/0.9-ncf
  • poldracklab/fmriprep: poldracklab/fmriprep/1.1.4-ncf
  • poldracklab/mriqc: poldracklab/mriqc/0.14.2-ncf, …
  • preprocess_gps: preprocess_gps/master-ncf
  • preprocess_gps_mc: preprocess_gps_mc/master-ncf
  • press: press/master-ncf
  • process_gps: process_gps/master-ncf
  • process_gps_mc: process_gps_mc/master-ncf
  • process_gpsh_mc: process_gpsh_mc/master-ncf
  • process_gpsp: process_gpsp/master-ncf
  • process_mri: process_mri/master-ncf
  • procfaster: procfaster/master-ncf, procfaster/1.1-ncf, …
  • proot: proot/main-ncf
  • pycharm: pycharm/4.0.1-ncf, pycharm/2017.3.1-ncf
  • pycharm-community: pycharm-community/2023.1-fasrc01
    a Python IDE with smart code completion, code inspections,
    on-the-fly error highlighting and quick-fixes, along with
    automated code refactorings and rich navigation capabilities
  • pyenv: pyenv/1.2.16-ncf
  • pylib: pylib/master-ncf, pylib/stable-ncf, pylib/4.0-ncf, …
  • pypi: pypi/0.1-ncf
  • python: python/2.7.16-fasrc01, python/3.10.9-fasrc01, python/3.10.12-fasrc01
    the Anaconda distribution of the Python programming language
  • qatools: qatools/1.1-ncf
  • qcact: qcact/master-ncf
  • qsiprep: qsiprep/0.14.0-ncf
  • questionnaire: questionnaire/master-ncf
  • rabbitmq: rabbitmq/3.6.6-ncf
  • redis: redis/4.0.11-ncf
  • rlibs: rlibs/3.3.3-ncf
  • rsnapshot: rsnapshot/1.4.2-ncf
  • rstudio: rstudio/2023.03.0-fasrc01, rstudio/2023.06.2-fasrc01
    RStudio is an integrated development environment (IDE) for R.
  • sage/10.0-fasrc01
  • sas: sas/9.4-fasrc01
    SAS 9.4
  • sbatch2: sbatch2/master-ncf
  • scans: scans/bugfix-ncf, scans/master-ncf, scans/1.0.0-ncf
  • scheduler: scheduler/dev-ncf, scheduler/await-ncf, …
  • schwarz/mri_reface: schwarz/mri_reface/test-ncf, …
  • sklearn: sklearn/0.18.1-ncf
  • slphone: slphone/master-ncf
  • snpm/13: snpm/13/12.6225b.1-ncf
  • spack: spack/main-ncf
  • spm: spm/2.0-ncf, spm/8.4667-ncf, spm/8.5236-ncf, spm/12.5581b-ncf, …
  • spmtools: spmtools/master-ncf, spmtools/1.0-ncf
  • spmtools-centos7: spmtools-centos7/master-ncf, …
  • stata: stata/17.0-fasrc01
    Stata: Stata is a general-purpose statistical software package :
    version MP 14.0 (64 core)
  • stopwatch: stopwatch/master-ncf
  • stunnel: stunnel/5.42-ncf, stunnel/5.66-ncf
  • sublime_text: sublime_text/3.1.1-ncf
  • survana: survana/0.1.8-ncf
  • survey: survey/master-ncf
  • sync: sync/master-ncf
  • sync_mc: sync_mc/master-ncf
  • sync_phone: sync_phone/master-ncf
  • syncphone: syncphone/master-ncf
  • syncphone_mc: syncphone_mc/master-ncf
  • szip: szip/2.1.1-fasrc01, szip/2.1.1-fasrc02
    Compression library for HDF5
  • tau/2.32.1-fasrc01
  • texts: texts/master-ncf
  • tigervnc: tigervnc/1.7.1-ncf
  • timestamp: timestamp/master-ncf, timestamp/stable-ncf
  • timezone: timezone/master-ncf
  • triple_a: triple_a/master-ncf, triple_a/v1.0.0-ncf, …
  • triple_a_centos7: triple_a_centos7/master-ncf
  • triptan: triptan/dev-ncf, …
  • upact: upact/master-ncf
  • venv/boldqc2: venv/boldqc2/master-py27-ncf
  • venv/boris: venv/boris/7.13.9-ncf
  • venv/cryptease: venv/cryptease/0.2.0-ncf
  • venv/extqc_report: venv/extqc_report/main-linux_x64-ncf, …
  • venv/habib/gps: venv/habib/gps/py37-ncf
  • venv/madrctagger: venv/madrctagger/main-ncf
  • venv/morphometrics3: venv/morphometrics3/master-ncf
  • venv/mrverify: venv/mrverify/0.0.1-ncf, venv/mrverify/0.0.2-ncf, …
  • venv/phoenix/1.0-py37-ncf: venv/phoenix/1.0-py37-ncf
  • venv/phoenix/gps: venv/phoenix/gps/py37-ncf
  • venv/ssbc_report: venv/ssbc_report/0.1.0-ncf
  • venv/syncxnat: venv/syncxnat/master-ncf
  • venv/yaxil: venv/yaxil/f96d6f3-ncf, venv/yaxil/0.7.2-ncf, …
  • vscode: vscode/1.76-fasrc01, vscode/1.82-fasrc01
    Lightweight and powerful source code editor.
  • watch: watch/master-ncf
  • wkhtmltox: wkhtmltox/0.12.3-ncf
  • xmetabeiwe: xmetabeiwe/master-ncf, xmetabeiwe/python-ncf
  • xnat2bids: xnat2bids/1.0-ncf
  • xnat_maintenance: xnat_maintenance/master-ncf, …
  • xnat_tools: xnat_tools/master-ncf, xnat_tools/1.0-ncf, …
  • xplor-nih/3.7.0.1-fasrc01
  • yaxil: yaxil/iProcShim-ncf, yaxil/master-ncf, yaxil/stable-ncf, …
  • zeus: zeus/3.0-ncf
  • zlib: zlib/1.2.11-fasrc01, zlib/1.2.11-fasrc02, zlib/1.2.13-fasrc01, zlib/1.3-fasrc01
    zlib version 1.2.11
© The President and Fellows of Harvard College
Except where otherwise noted, this content is licensed under Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International license.