FASRC maintains a Github repository with codes and examples for many applications and processes.

We endeavor to add links to these codes on the relevant document here in our documentation, but in the interest of catching edge cases, here is a copy of the current list of items and subjects in that repositor:

Example Codes, Use Cases & Documentation

Machine Learning Frameworks

• TensorFlow
• PyTorch
• MXNet
• Theano
• Keras
• FLUX (Julia)

Programming Languages and Environments

• BASH
• C
• C++
• Fortran
• IDL
• Julia
• Mathematica
• MATLAB
• Perl
• Python
• R
• STATA

Numerical and I/O Libraries

• Armadillo
• MKL
• BLAS
• LAPACK
• GSL
• HDF5
• FFTW
• NETCDF
• OpenBLAS

Parallel Computing

• MPI
• OpenMP
• Hybrid (MPI+OpenMP)
• Python
• R
• Julia
• MATLAB
• Mathematica
• STATA
• Parallel HDF5

Example Recipes

• Job arrays
• Movie processing and reading data from CSV files
• MATLAB MEX files from C++ source code
• Image processing with MATLAB
• Parallel Job Arrays
• Pytorch Example

Applications

• CryoSPARC
• Dynamite
• LANDIS
• Knitro
• Schrodinger
• TotalView
• Weather Research and Forecasting (WRF) Model

Visualization

• Yt
• ParaView
• VisIt

Singularity Containers

• MPI Applications