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FASRC Github User Codes Repository
Overview
FASRC maintains a Github repository with codes and examples for many applications and processes. We endeavor to add links to these codes on the relevant document here in our documentation, but in the interest of catching edge cases, here is a copy of the current list of items and subjects in that repository. Note that this listing is not necessarily complete. We invite you to checkout the github repo and use the search functions there. Community contributions, comments, pull requests, and corrects are welcome and appreciated.
Building Software
Singularity Containers
Programming Languages and Environments
Numerical and I/O Libraries
Machine Learning Frameworks
Parallel Computing
- Embarrassingly Parallel
- HDF5
- MATLAB
- MPI
- MPI-IO
- Mathematica
- NetCDF
- OpenMP
- PnetCDF
- Python
- R
- STATA
- ScaLAPACK
Applications
- AlphaFold
- CryoSPARC
- Dynamite
- Knitro
- LANDIS
- Schrodinger
- TotalView
- Weather Research and Forecasting (WRF) Model
Preformance
Example Recipes
- Image processing with MATLAB
- Job Arrays
- MATLAB MEX files from C++ source code
- Movie processing and reading data from CSV files
- Parallel Job Arrays
- Pytorch Example