FASRC Applications on User_Codes

Installation of Scientific Software

Installation instructions for multiple scientific applications
including Bioinformatics, Computational Chemistry, and Climate
Modeling on the cluster. Corresponding folders contain example scripts
to execute these applications on the cluster after successful
installation.

Contents:

• AlphaFold: Instructions to install and run AlphaFold on the cluster.
• CryoSPARC: Instructions to install and run CryoSPARC on the cluster.
• Dynamite: Instructions to set up and execute Dynamite on the cluster.
• Knitro: Examples to use Knitro with Matlab, Python, and C on the cluster.
• LANDIS: Instructions to either install LANDIS or use its singularity image and run it on the cluster.
• PariGP: Instructions to load PariGP’s module on the cluster and example scripts to execute it.
• Schrodinger: Instructions to run Schrodinger on the cluster along with an example script to start it in batch mode.
• TotalView: Instructions to load the TotalView module and use that to run the application on the cluster in MPI mode.
• WRF_Model: Instructions to configure and compile WRF on the cluster.